species:   Fugra
pid:       PID0949
parent:    FgmilR-7dps-46
paralog:   
locus:     NC_026475.1:7010115-7010199
matures:   ['UCUGGGACUCGCUACCACCGGGC', 'GCGGCGGUAGUUGAUCUUAGUG']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026475.1:7010115-7010199

12 out of bounds
3 alignments
3 proper strand
1 stranded perfect matches

              ********************                    ********************           
AGCUCUUCCAGGCGCGGCGGUAGUUGAUCUUAGUGAGAGGCAUGGUGUCGUUGAUCUGGGACUCGCUACCACCGGGCUCAGAGUU
.(((((....(((.(((.((((((.(((((((((.((.((((...)))).)).).)))))).)))))))).))).))).))))).
------------------------------------------------------UCUGGGACUCGCUACCACCGGGC-------- l=23 a=0 c
-------------GCGGCGGUAGUUGAUCUUAGUG-------------------------------------------------- l=22 a=0 c*
--------------------------------------------------------UGGGACUCGCUACCACCG----------- l=18 a=1 ma
----------------GCGGUAGUUGAUCUUAGU--------------------------------------------------- l=18 a=0 ma*

---UCUUCCAGGCGCGGCGGUAGUUGAa--------------------------------------------------------- l=25 a=2 
--------------------------------------------------------UGGGACUCGCUACCACCG----------- l=18 a=1 (ma)

mb-01111
ax-1011001
ku-01
ss-100011111100
fn-011
